Recent Research and General Talks

• KingmanFest  (Royal Society , 20.1.2019) [pptx]
• Importance sampler for 2-locus models  (Canberra , 12.11.2018) [pptx]
• Graduate Lecture on Algorithms and Combinatorics in ChemoInformatics (Jotun Hein, 17.5.2018) [pptx]
• CSML Talk on Probabilistic Inference of Nucleotide Coevolution (Michael Golden, 9.2.2018) [google slides]
• International Origin of Life Conference (William Larsen and Jotun Hein, 29.8.2017) [pptx]
• Combinatorics of Recombination  (Jotun Hein, 1.6.2017) [pptx]
• Research collaboration day – Four Projects (Jotun Hein, 31.5.2017) [mp4 video] [pptx]
• Pep Talk to High School Students (Jotun Hein, 29.4.2017) [pptx]
• Statistical Alignment and Historical Linguistics  (Jotun Hein, 28.3.2017) [pptx]
• to Danish High School: Oxford University and University College (Jotun Hein, 21.3.2017) [pptx]
• An evolutionary model of protein structure (Jotun Hein, 1.12.2016) [pptx]
• 10 Classics in Computation  (Jotun Hein and Søren Riis, 16.11.2016) [pptx]
• A generative angular model of protein structure evolution (Michael Golden, 28.11.16) [google slides]
• LangleyFest 22.5.15 [pptx]

Book review talks, reports and reviews

• Mathematical Chemistry and Chemoinformatics (William Larsen and Jotun Hein, 7.11.2016) [pptx]
• An introduction to Chemoinformatics by Leach and Gillet and selected papers (William Larsen and Jotun Hein, 6.12.2016) [pptx]
• Phylogenetics by Semple and Steel (Jotun Hein) [pptx][pdf]
• Models of Life by Kim Sneppen (Jotun Hein) [pptx]
• Phylogeny: Discrete and random processes in evolution by Mike Steel (Jotun Hein) [pptx] [report] [review]
• Molecular Dynamics with Deterministic and Stochastic Numerical Methods by Leimkuhler & Matthews (Jotun Hein) [pptx][review]
• Protein physics by Ptitsyn and Finkelstein (Jotun Hein, 26.6.2016) [pptx]
• Bayesian Methods in Structural Bioinformatics (Jotun Hein) [pptx] [review]
• ReCombinatorics by Dan Gusfeld (Jotun Hein) [pptx] [review]
• Review of Ziheng Yang (2014) Molecular Evolution A Statistical Approach [pdf]
• Review of Fall et al. (2002) Computational Cell Biology [pdf]
• Review of Grant and Ewens (2001) Statistical Methods for Bioinformatics [pdf]
• Review of Durbin et al (1998) Biological Sequence Analysis [pdf]

Lectures by Jotun Hein

• Machine/Deep Learning and the OMICS (15.1.19 with Irina Mohorianu) [ppt]
• Optimization Alignment – Pairwise (2018) [ppt]
• Optimization Alignment – Multiple: Exact Algorithms Pairwise (2018) [ppt]
• Optimization Alignment – Multiple: Heuristics (2018) [ppt]
• Alignment Variants: HMM, Profile, Local, Alignment Free (2018) [ppt]
• Indel Processes and the Basic Model (TKF91) (2018) [ppt]
• Long Indel and Irreversible Model (2018) [ppt]
• Statistical Alignment – Algorithms for Multiple Sequences (2018) [ppt]
• Alignment and Annotation (2018) [ppt]
• Alignment beyond Sequences: Multigene Families (2018) [ppt]
• Alignment beyond Sequences and Genomes (2018) [ppt]
• Summary and Open Problems in Alignment (2018) [ppt]
• The Origin of Life (08.02.16) [ppt]
• Substitution models (14.03.16) [ppt]
• Basic coalescent (16.03.16) [ppt]
• Genome annotation (17.03.16) [pptx]
• Integrative genomics, mapping and functional explanation (21.03.16) [pptx]
• Networks (23.03.16) [ppt]
• Recombination (18.03.16) [ppt]
• Basic Models of Substitution (15.10.08) [ppt] [pdf]
• Advanced Models of Substitution (16.10.08) [ppt]
• Advanced Questions in Sequence Evolution Models (22.10.08) [ppt] [pdf]
• Tree Combinatorics (22.10.09) [ppt] [pdf]
• Tree Inference (30.10.08) [ppt] [pdf]
• Tree Reconstruction (29.10.08) [ppt] [pdf]
• Genome Annotation (1.12.09) [ppt] [pdf]
• Network Inference (21.1.10) [ppt] [pdf]
• Network Evolution (23.11.09) [pdf]
• Data, Integrative Genomics and Genotype to Phenotype Functions (12.10.09) [ppt]
• Hidden Markov Models (10.5.09) [ppt] [pdf]
• Finding Signals in Sequences (4.12.08) [ppt] [pdf]
• Comparative Genomics (26.2.09) [pdf]
• Molecular Evolution (23.2.09) [ppt] [pdf]
• Network Dynamics (12.11.08) [ppt] [pdf]
• Recombination (3.12.08) [ppt] [pdf]